Microarray One Channel Quantile Normalization Options
See Also
This dialog can be used to set options for the one channel quantile normalization menu.

Summary Method

Specifies which way that the overall distribution is produced from the CDFs from each slide.
Means The mean is taken across CDF's.
Medians The median is taken across CDF's.
Geometric Means The geometric mean is taken across CDF's. This is the mean on the log scale, back-transformed to the natural scale.

Display

Specifies which items of output are to be produced.
Summary A summary of the quantiles on each slide and of the overall distribution that the slides are normalized to.

Graphics

Specifies which graphs are to be produced.
Histogram of Intensities by slide The plot of the histogram of intensities on each slide in a trellis plot
CDF's of Intensity by slide The plot of the cumulative probability of intensities on each slide.
Use Trellis plot for CDF's This is an option that puts the CDF plots in either a trellis plot or superimposed on a common graph, if not selected.
Histogram of Normalized Intensity The plot of the histogram of intensities that each slide is normalized to.
CDF of Intensities by slide The plot of the cumulative probability of intensities that each slide is normalized to.

Action Buttons

OKSave the option settings and close the dialog.
CancelClose the dialog without making any changes.
DefaultsReset the options to their default settings.

See Also