False Discovery Rate using Bonferroni Options

Display

Specifies which items of output are to be produced.

Pi 0	The estimate of π₀

Specifies which graphs are to be produced:

Histogram of P-values	The histogram of input probabilities
Histogram of Q-values	The histogram of q - values - the estimated false discovery rates
Lambda vs Pi 0	The plot of λ against π₀ (when only one value of λ is specified the default values (0,0.05...0.9) are used).
Tests	The plot of the sorted tests against q-values.
Expected false positives	The plot of the number of expected false positives against the sorted tests.
Inference	The plot of FDR, FRR and Power against p
Log Inference	The plot of FDR, FRR and Power statistics on log scales, with the X-axis restricted to probabilities < 0.5, with a background grid, to enable estimates to be read for specific probability values.

Display under the inference plots the key to the curves for FDR, FRR and Power.

Lower bound of q-values to use with plots Q vs P, Tests and Expected False Positives.

Upper bound of q-values to use with plots Q vs P, Tests and Expected False Positives.

Change the options for the mixture model.

Close the dialog without changing the options.

Set the option settings back to the default settings.