| Two-way Cluster Mean Matrix | matrix |
The tabulation of the log-ratios by probe groups
and target groups, as a two-way matrix. This contains data used by the shade plot.
|
| Probe Group Membership | factor |
stores the probe group membership for each probe or gene. The groups
are specified by the probe ngroups or probe groups threshold %
options for the hierarchical and non-hierarchical
cluster methods respectively.
|
| Target Group Membership | factor |
stores the target group membership for each target or slide. The groups
are specified by the threshold % or number of groups
options for the hierarchical and non-hierarchical
cluster methods respectively.
|
| Probe Amalgamations Matrix | matrix |
contains the probes or genes amalgamation data produced by hierarchical clustering.
This is only available if the cluster method is set
to hierarchical.
|
| Target Amalgamations Matrix | matrix |
contains the target or slides amalgamation data produced by hierarchical clustering.
This is only available if the cluster method is set
to hierarchical.
|